Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs73244013 chr4:40940223 C/T 2.0E-5 170 25.4 25.67 12.63 KM Plot
PCPG rs7325527 chr13:37533547 T/C 0.00031 177 4.17 24.23 25.87 KM Plot
PCPG rs73264692 chr12:7141382 G/A 1.35E-10 171 25.53 22.63 10.3 KM Plot
PCPG rs73264696 chr12:7142367 T/C 1.35E-10 171 25.53 22.63 10.3 KM Plot
PCPG rs73266713 chr12:7148943 C/T 1.6E-10 170 25.47 22.63 10.3 KM Plot
PCPG rs7328626 chr13:54150907 G/A 0.000227 177 25.67 19.87 3.17 KM Plot
PCPG rs7329095 chr13:114176950 C/T 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs7329863 chr13:114176968 A/G 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs7330114 chr13:54151041 T/C 0.000227 177 25.67 19.87 3.17 KM Plot
PCPG rs7334233 chr13:37574681 C/T 0.00031 176 4.17 24.47 25.87 KM Plot
PCPG rs73348181 chr8:126164568 G/A 3.56E-5 175 25.6 28.3 3.67 KM Plot
PCPG rs7334938 chr13:114176954 T/C 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs7335634 chr13:54182220 A/G 0.000222 178 3.17 20.47 25.6 KM Plot
PCPG rs7336859 chr13:54182173 T/C 0.000258 176 25.53 20.17 3.17 KM Plot
PCPG rs7339296 chr13:37610933 C/T 0.000327 177 4.17 24.17 25.92 KM Plot